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Matolab OpenBIS Ontology (OpenBISOnt)

Release 2024-01-15

This version:
http://w3id.org/matolab/openbis/1.0.0
Revision:
1.0.0
Authors:
Matolab OpenBISmatic Team
Contributors:
Andre Valdestilhas (Bundesanstalt für Materalprüfung und -forschung BAM)
Mariam Rizkallah (Fraunhofer IFAM)
Rasmus Antons (Fraunhofer IWM)
Thomas Hanke (Fraunhofer IWM)
Download serialization:
JSON-LD RDF/XML N-Triples TTL
License:
http://creativecommons.org/licenses/by/4.0/
Visualization:
Visualize with WebVowl
Cite as:
obis: MatoLab openbis ontology. Version 1.0.0, http://w3id.org/matolab/ontology/
Provenance of this page
Ontology Specification Draft

Abstract

This is a simple Ontology expaining the data model of OpenBIS.

Matolab OpenBIS Ontology (OpenBISOnt): Overview back to ToC

This ontology has the following classes and properties.

Classes

Object Properties

Data Properties

Annotation Properties

Named Individuals

Cross-reference for Matolab OpenBIS Ontology (OpenBISOnt) classes, object properties and data properties back to ToC

This section provides details for each class and property defined by Matolab OpenBIS Ontology (OpenBISOnt).

Classes

Collectionc back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/Collection

An OpenBIS Collection of Objects and DataSets.
has super-classes
entity c
is in domain of
relates to op
is in range of
relates to op
has members
General Protocols Collection, a default OpenBIS collection to contain the lab proceedures generally used in the lab. ni
is disjoint with
Identifier c, Object c, Project c, Space c, User c

Data Servicec back to ToC or Class ToC

IRI: http://www.w3.org/ns/dcat#DataService

has super-classes
software agent c
has sub-classes
OpenBIS Data Store c
is in domain of
endpoint u r l dp

Data Setc back to ToC or Class ToC

IRI: http://www.w3.org/ns/dcat#Dataset

An folder where data files are stored. A data set has user-defined properties.
has super-classes
entity c
is in domain of
distribution op, relates to op

Distributionc back to ToC or Class ToC

IRI: http://www.w3.org/ns/dcat#Distribution

has super-classes
entity c
is in domain of
byte size dp, dataset permId op, download u r l dp, file path dp
is in range of
distribution op

Identifierc back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/Identifier

A String as additional Identifier.
has super-classes
entity c
has sub-classes
Permanent Identifier c
is in domain of
is identifier of op, is tag of op
is in range of
has identifier op, has tag op
is disjoint with
Collection c, Object c, Project c, Space c, User c

Objectc back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/Object

An OpenBIS entity of an object.
has super-classes
entity c
is in domain of
has child op, has parent op, relates to op
is in range of
has child op, has parent op, relates to op
is disjoint with
Collection c, Identifier c, Project c, Space c, User c

OpenBIS Data Storec back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/DataStore

A openBIS database service hosting files.
has super-classes
Data Service c
is in domain of
relates to op

Permanent Identifierc back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/PermanentIdentifier

A additional String given by the OpenBIS data storage which will never be changed.
has super-classes
Identifier c
is in range of
dataset permId op

Projectc back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/Project

An OpenBIS Project.
has super-classes
entity c
is in domain of
relates to op
is in range of
relates to op
has members
Protocols Project, a default OpenBIS project for proceedures. ni
is disjoint with
Collection c, Identifier c, Object c, Space c, User c

Spacec back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/Space

An OpenBIS Space.
has super-classes
entity c
is in domain of
relates to op
is in range of
relates to op
has members
Materials Space, a default OpenBIS space for material entities. ni, Methods Space, a default OpenBIS space for methods and proceedures. ni
is disjoint with
Collection c, Identifier c, Object c, Project c, User c

Userc back to ToC or Class ToC

IRI: http://w3id.org/matolab/openbis/User

An named openBIS user.
is equivalent to
agent c
has super-classes
person c
is disjoint with
Collection c, Identifier c, Object c, Project c, Space c

Object Properties

contributorop back to ToC or Object Property ToC

IRI: http://purl.org/dc/terms/contributor

has super-properties
top object property
has domain
entity c
has range
agent c

creatorop back to ToC or Object Property ToC

IRI: http://purl.org/dc/elements/1.1/creator

has domain
entity c
has range
agent c

dataset permIdop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/dataset_permid

has domain
Distribution c
has range
Permanent Identifier c

distributionop back to ToC or Object Property ToC

IRI: http://www.w3.org/ns/dcat#distribution

has domain
Data Set c
has range
Distribution c

has childop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/has_child

Relation towards the child of an Object.
has domain
Object c
has range
Object c
is inverse of
has parent op

has identifierop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/has_identifier

Relation pointing to an Identifier concretizing the Identity of the entity further.
has domain
entity c
has range
Identifier c
is inverse of
is identifier of op

has parentop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/has_parent

Inverse of has_child.
has domain
Object c
has range
Object c
is inverse of
has child op

has tagop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/has_tag

Relation pointing to an Tag concretizing the Category of the entity.
has domain
entity c
has range
Identifier c
is inverse of
is tag of op

is identifier ofop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/is_identifier_of

Inverse of has_identifier.
has domain
Identifier c
has range
entity c
is inverse of
has identifier op

is tag ofop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/is_tag_of

Inverse of has_tag.
has domain
Identifier c
has range
entity c
is inverse of
has tag op

relates toop back to ToC or Object Property ToC

IRI: http://w3id.org/matolab/openbis/relates_to

A general relation of OpenBIS instance marking them related to each other.

has characteristics: symmetric

has domain
Collection c
OpenBIS Data Store c
Object c
Project c
Space c
Data Set c
has range
Collection c
Object c
Project c
Space c

Data Properties

byte sizedp back to ToC or Data Property ToC

IRI: http://www.w3.org/ns/dcat#byteSize

has domain
Distribution c
has range
non negative integer

download u r ldp back to ToC or Data Property ToC

IRI: http://www.w3.org/ns/dcat#downloadURL

has super-properties
top data property
has domain
Distribution c
has range
resource

endpoint u r ldp back to ToC or Data Property ToC

IRI: http://www.w3.org/ns/dcat#endpointURL

has super-properties
top data property
has domain
Data Service c
has range
resource

file pathdp back to ToC or Data Property ToC

IRI: http://w3id.org/matolab/openbis/file_path

has domain
Distribution c
has range
string

Annotation Properties

alt labelap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#altLabel

bibliographic citationap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/bibliographicCitation

codeap back to ToC or Annotation Property ToC

IRI: http://w3id.org/matolab/openbis/code

has range
string

contributorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/elements/1.1/contributor

createdap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/created

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/creator

definitionap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2004/02/skos/core#definition

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/description

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

openbis json keyap back to ToC or Annotation Property ToC

IRI: http://w3id.org/matolab/openbis/openbis_json_key

has range
string

preferred namespace prefixap back to ToC or Annotation Property ToC

IRI: http://purl.org/vocab/vann/preferredNamespacePrefix

preferred namespace uriap back to ToC or Annotation Property ToC

IRI: http://purl.org/vocab/vann/preferredNamespaceUri

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/title

Named Individuals

General Protocols Collection, a default OpenBIS collection to contain the lab proceedures generally used in the lab.ni back to ToC or Named Individual ToC

IRI: http://w3id.org/matolab/openbis/GeneralProtocols

belongs to
Collection c

Materials Space, a default OpenBIS space for material entities.ni back to ToC or Named Individual ToC

IRI: http://w3id.org/matolab/openbis/Materials

belongs to
Space c

Methods Space, a default OpenBIS space for methods and proceedures.ni back to ToC or Named Individual ToC

IRI: http://w3id.org/matolab/openbis/Methods

belongs to
Space c

Protocols Project, a default OpenBIS project for proceedures.ni back to ToC or Named Individual ToC

IRI: http://w3id.org/matolab/openbis/Protocols

belongs to
Project c

Legend back to ToC

c: Classes
op: Object Properties
dp: Data Properties
ni: Named Individuals

Acknowledgments back to ToC

The authors would like to thank Silvio Peroni for developing LODE, a Live OWL Documentation Environment, which is used for representing the Cross Referencing Section of this document and Daniel Garijo for developing Widoco, the program used to create the template used in this documentation.